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1. EcoCyc, Encyclopedia of E. coli Genes and Metabolism EcoCyc is a bioinformatics database that describes the genome and the biochemical machinery of E. coli. The long-term goal of the project is to describe the molecular catalog of the E. coli cell, as well as the functions of each of its molecular parts, to facilitate a system-level understanding of E. coli.
2. MetaCyc: Metabolic Encyclopedia MetaCyc is a meta-metabolic database because it contains pathways from a variety of different organisms. MetaCyc describes metabolic pathways, reactions, enzymes, and substrate compounds. The MetaCyc data were gathered from a variety of literature and on-line sources, and contain citations to the source of each pathway.
3. National Center for Genome Resources (NCGR) Research origrams focus on genomics, biochemical pathways and gene expression. A variety of software tools that facilitate analysis of different biological data types.
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